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2010 |
| Tim Hohm and Eckart Zitzler: A hierarchical approach to model parameter optimization for developmental systems BioSystems Volume 102, p. 157-167 2010. Article [Details] [BibTeX] [Paper as PDF] |
| Tim Hohm, Eckart Zitzler and Rüdiger Simon: A Dynamic Model for Stem Cell Homeostasis and Patterning in Arabidopsis Meristems PLoS ONE Volume 5, Issue 2, p. e9189 2010. Article [Details] [BibTeX] [Paper as PDF] |
| Tim Hohm: Modeling of Gene Regulative Networks in Developmental Systems 2010. PhD Thesis [Details] [BibTeX] [Paper as PDF] |
2009 |
| Tim Hohm, Eckart Zitzler and Rüdiger Simon: A dynamic model for stem cell homeostasis and patterning in Arabidopsis meristems 2009. Techreport [Details] [BibTeX] [Paper as PDF] |
| Tim Hohm and Eckart Zitzler: Multicellular Pattern Formation: Parameter Estimation for ODE-based Gene Regulatory Network Models IEEE Eng Med Biol Volume 28, Issue 4, p. 52-57 2009. Article [Details] [BibTeX] [Paper as PDF] |
| Tim Hohm and Eckart Zitzler: A Multiobjective Evolutionary Algorithm for Numerical Parameter Space Characterization of Reaction Diffusion Systems Heidelberg, Germany, p. 162-174 2009. Inproceedings [Details] [BibTeX] [Paper as PDF] |
| Tim Hohm and Eckart Zitzler: Multiobjectivization for Parameter Estimation: a Case-Study on the Segment Polarity Network of Drosophila New York, NY, USA, p. 209-216 2009. Inproceedings [Details] [BibTeX] [Paper as PDF] |
2008 |
| Wolfram Gronwald, Tim Hohm and Daniel Hoffmann: Evolutionary Pareto-optimization of stably folding peptides BMC Bioinformatics Volume 9, Issue 109 2008. Article [Details] [BibTeX] [Paper as PDF] |
2007 |
| Marco Terzer, Marko Jovanovic, Alexandra Choutko, Olga Nikolayeva, Arthur Korn, Dimo Brockhoff, Franz Zürcher, Michael Friedmann, Robert Schütz, Eckart Zitzler, Joerg Stelling
and Sven Panke: Design of a biological half adder IET Synthetic Biology Volume 1, Issue 1, p. 53-58, August 2007. Article [Details] [BibTeX] [External Link] [Paper as PDF] |
| Stefan Bleuler and Eckart Zitzler: Discrimination of Metabolic Flux Profiles Using a Hybrid Evolutionary Algorithm Genetic and Evolutionary Computation Conference (GECCO 2007), p. 354–360, July 2007. Inproceedings [Details] [BibTeX] |
| Tim Hohm and Eckart Zitzler: Modeling the Shoot Apical Meristem in A. thaliana: Parameter Estimation for Spatial Pattern Formation Valencia, Spain, p. 102-113, April 2007. Inproceedings [Details] [BibTeX] [Paper as PDF] |
2006 |
| Michael Calonder, Stefan Bleuler and Eckart Zitzler: Module Identification from Heterogeneous Biological Data Using Multiobjective Evolutionary Algorithms PPSN IX, p. 573-582, September 2006. Inproceedings [Details] [BibTeX] |
| Amela Prelic, Stefan Bleuler, Philip Zimmermann, Anja Wille, Peter Bühlmann, Wilhelm Gruissem, Lars Hennig, Lothar Thiele and Eckart Zitzler: Comparison of Biclustering Methods: A Systematic Comparison and Evaluation of Biclustering Methods for Gene Expression Data. Bioinformatics Volume 22, Issue 9, p. 1122-1129, May 2006. Article [Details] [BibTeX] |
| Amela Prelic, Stefan Bleuler, Philip Zimmermann, Anja Wille, Peter Bühlmann, Wilhelm Gruissem, Lars Hennig, Lothar Thiele and Eckart Zitzler: Comparison of Biclustering Methods: A Systematic Comparison and Evaluation of Biclustering Methods for Gene Expression Data Issue 227, February 2006. Techreport [Details] [BibTeX] [Paper as PDF] |
| Stefan Bleuler, Philip Zimmermann, Markus Friberg, Anja Wille, Simon Barkow, Dimo Brockhoff, Daniel Schöner, Lars Hennig, Peter Bühlmann, Wilhelm Gruissem, Lothar Thiele and
Eckart Zitzler: Cluster Analysis of Multiple Time Course Data Sets Issue 241 2006. Techreport [Details] [BibTeX] |
| Stefan Bleuler, Philip Zimmermann, Markus Friberg, Anja Wille, Simon Barkow, Dimo Brockhoff, Daniel Schöner, Lars Hennig, Peter Bühlmann, Wilhelm Gruissem, Lothar Thiele and
Eckart Zitzler: Cluster Analysis of Multiple Time Course Data Sets submitted 2006. Article [Details] [BibTeX] |
| Simon Barkow, Stefan Bleuler, Amela Prelic, Philip Zimmermann and Eckart Zitzler: BicAT: A Biclustering Analysis Toolbox Bioinformatics Volume 22, Issue 10, p. 1282-1283 2006. Article [Details] [BibTeX] |
2005 |
| Daniel Schöner, Simon Barkow, Stefan Bleuler, Anja Wille, Philip Zimmermann, Peter Bühlmann, Wilhelm Gruissem and Eckart Zitzler: Network Analysis Plant Systems Biology 2005. Incollection [Details] [BibTeX] |
| Stefan Bleuler and Eckart Zitzler: Order Preserving Clustering over Multiple Time Course Experiments European Workshop on Evolultionary Computation and Bioinformatics (EvoBIO 05), p. 33-43 2005. Inproceedings [Details] [BibTeX] |
2004 |
| Stefan Bleuler, Amela Prelic and Eckart Zitzler: An EA Framework for Biclustering of Gene Expression Data Congress on Evolutionary Computation (CEC 2004), Portland, p. 166-173, June 2004. Inproceedings [Details] [BibTeX] |
| Anja Wille, Philip Zimmermann, Eva Vranova, Andreas Fürholz, Oliver Laule, Stefan Bleuler, Lars Hennig, Amela Prelic, Peter von Rohr, Lothar Thiele, Eckart Zitzler, Wilhelm
Gruissem and Peter Bühlmann: Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana Genome Biology Volume 5, Issue 11, p. R92 2004. Article [Details] [BibTeX] [Paper as PDF] |
2003 |
| Robert Hubley, Eckart Zitzler and Jared Roach: Evolutionary algorithms for the selection of single nucleotide polymorphisms BMC Bioinformatics Volume 4, Issue 30, July 2003. Article [Details] [BibTeX] |
2002 |
| Robert Hubley, Eckart Zitzler, Andrew Siegel and Jared Roach: Multiobjective Genetic Marker Selection Advances in Nature-Inspired Computation: The PPSN VII Workshops, p. 32-33, September 2002. Inproceedings [Details] [BibTeX] [Paper as PDF] |
2001 |
| Somenath Biswas and Samarjit Chakraborty: Fast Algorithms for Determining Protein Structure Similarity Proceedings of the Workshop on Bioinformatics and Computational Biology, at the 8th International Conference on High Performance Computing (HiPC), Hyderabad, India, December 2001. Inproceedings [Details] [BibTeX] [Paper as PDF] |
